PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479409.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 538aa    MW: 58492.5 Da    PI: 8.8177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0596118123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_016479409.1  96 FVCEICNKGFQRDQNLQLHRRGH 118
                     89*******************88 PP

2zf-C2H212.60.0004172194123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_016479409.1 172 WKCEKCSKKYAVQSDWKAHSKTC 194
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-695118No hitNo description
SMARTSM003550.01796118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94996118IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM00355210137167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4160193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-6167192No hitNo description
SMARTSM00355140172192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NTTGGIYPPQ YNFAPPNQQI  60
QAQHQIKKKR NQPGNPDPGA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRTSK EIRKKVYVCP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKK  180
YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITGNPILPSQ  240
TGSSSHLNLQ FQQSQFNSHE FPAAFSLKKE QQTGFNLRPE IPPWLMTCQP LVGGGGPGPG  300
PPPPQPIDLS SSIFQSTRFE QDYTPNHGQD LNPNPSLNFS STGSLPSPHI SATALLQKAA  360
QMGATMSNKS STVSAAATGP SPTMLMRPHQ FHVSAAAAES VSNNATDFGL NLSSREDLTT  420
GFFNSLASYG NKAATITAAA VATVPVTGPL TSAPSPTSFI MTSFSSANTT GFEGSNFEDE  480
FGGIGILNSK KGNDGNDDMT KDFLGLRPLS HSDIFNIAGL VNTTTIENQS QNHKTWQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122134KLKQRTSKEIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479409.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_016479410.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-128IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0ZR950.0M0ZR95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-112indeterminate(ID)-domain 7